The Ultimate Guide to Atlassian Cloud Migration for Enterprises

Migrating to Atlassian Cloud is a strategic move for enterprises looking to modernize their IT infrastructure while ensuring security, compliance, and scalability. Whether transitioning from Atlassian Data Center, Server, or another platform, careful planning and execution are essential for a smooth migration.

This guide outlines the key steps, best practices, and benefits of moving to Atlassian Cloud, helping enterprises make informed decisions and maximize their investment in cloud technology.

Why Migrate to Atlassian Cloud?

Atlassian Cloud offers numerous advantages for enterprises, including:

  • Automatic Updates and Maintenance – Ensuring access to the latest features and security patches without manual intervention.
  • Scalability – Allowing businesses to scale their operations as they grow, without managing hardware or infrastructure.
  • Built-in Security and Compliance – Providing enterprise-grade security features and compliance with industry standards.
  • Cost Efficiency – Reducing expenses related to hardware, maintenance, and IT administration.
  • Remote Accessibility – Enabling teams to collaborate securely from anywhere.

With Atlassian’s end of support for Server products, many enterprises are prioritizing migration to Cloud or Data Center to maintain security and support.

Key Steps in Atlassian Cloud Migration

1. Assess Your Current Environment

Before migrating, evaluate your existing Atlassian setup, including:

  • User Accounts and Permissions – Understanding who has access and what roles they play.
  • Apps and Integrations – Identifying third-party plugins and custom scripts.
  • Data Volume – Analyzing how much data needs to be transferred.
  • Compliance and Security Requirements – Ensuring the cloud environment meets organizational policies.

A thorough assessment helps identify potential challenges and sets the foundation for a successful migration.

2. Choose the Right Cloud Plan

Atlassian offers different cloud plans to meet enterprise needs:

  • Standard – Suitable for small to mid-sized teams with essential security and collaboration tools.
  • Premium – Includes advanced administration features, performance insights, and a 99.9% uptime SLA.
  • Enterprise – Designed for large-scale organizations with unlimited sites, centralized security, and compliance controls.

Choosing the appropriate plan ensures your organization has the necessary features and support for long-term success.

3. Prepare and Clean Up Data

Migrating unnecessary data can complicate the process. To streamline migration:

  • Archive Unused Projects – Reduce the volume of data being transferred.
  • Standardize Naming Conventions – Ensure consistency across projects and issues.
  • Review Permission Structures – Avoid carrying over outdated or excessive user roles.
  • Assess App Dependencies – Identify essential plugins and find cloud-compatible alternatives if necessary.

4. Run a Test Migration

A test migration allows enterprises to detect and resolve issues before the full transition. Steps include:

  • Using a Sandbox Environment – Simulating the migration without affecting live data.
  • Validating Data Integrity – Checking that all projects, issues, and configurations migrate correctly.
  • Testing Workflows and Permissions – Ensuring functionality remains intact post-migration.
  • Gathering Feedback from Key Users – Identifying usability concerns before final deployment.

5. Execute the Migration

Once testing is complete, plan the full migration. Consider:

  • Scheduling During Low Activity Periods – Minimizing disruptions to business operations.
  • Communicating with Stakeholders – Keeping employees informed about the process and expected downtime.
  • Monitoring the Migration – Addressing any issues that arise in real time.

6. Post-Migration Validation and Optimization

After migrating, confirm that everything is working as expected:

  • Verify Data Accuracy – Ensure all information is transferred correctly.
  • Monitor System Performance – Address any performance concerns early.
  • Train Users on New Features – Helping teams adapt to cloud functionalities.
  • Optimize Workflows – Leveraging automation and integrations for better efficiency.

Overcoming Common Migration Challenges

1. Data Complexity

Large enterprises often have vast amounts of data, making migration complex. Solution:

  • Use Atlassian’s Cloud Migration Assistant to analyze data and identify potential roadblocks.
  • Archive or clean up unnecessary historical data.

2. Third-Party App Compatibility

Not all Server or Data Center apps are available in the Cloud. Solution:

  • Identify critical apps and check for cloud equivalents.
  • Work with vendors to find suitable replacements.

3. Security and Compliance Concerns

Enterprises handling sensitive data need to ensure regulatory compliance. Solution:

  • Choose Atlassian Enterprise Cloud for advanced security features and data residency options.
  • Implement Single Sign-On (SSO) and Multi-Factor Authentication (MFA).

4. User Adoption and Training

Migrating to a new platform requires employees to adjust to new workflows. Solution:

  • Conduct training sessions and provide documentation for teams.
  • Establish internal support channels for addressing user concerns.

How Clovity Can Help with Atlassian Cloud Migration

As an Atlassian Gold Solution Partner, Clovity provides expertise in cloud migration, ensuring a smooth transition with minimal disruption. Our services include:

  • Migration Readiness Assessment – Analyzing your current setup and identifying challenges.
  • Strategic Migration Planning – Developing a detailed roadmap for a structured migration.
  • Execution and Testing – Handling data migration, user onboarding, and quality checks.
  • Post-Migration Support – Offering training, troubleshooting, and continuous optimization.

By working with Clovity, enterprises can migrate to Atlassian Cloud with confidence, ensuring security, compliance, and efficiency.

Migrating to Atlassian Cloud is a significant step for enterprises looking to modernize their IT operations. By following best practices—such as assessing data, choosing the right plan, running test migrations, and providing user training—businesses can achieve a smooth transition with minimal risk.

With expert guidance from Clovity, enterprises can simplify the migration process while ensuring long-term success in the cloud environment.

For more information on Atlassian Cloud migration,

📧 Contact us at sales@clovity.com or visit 🌠atlassian.clovity.com to get started today

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